Calculate the frequency distribution of all 64 codons in a DNA sequence.
Usage
calculate_codon_frequencies(sequence, normalize = TRUE, remove_zeros = FALSE)
Arguments
- sequence
Character string or DNAString object representing DNA sequence
- normalize
Boolean indicating whether to normalize frequencies (default: TRUE)
- remove_zeros
Boolean should REMOVE codons with zero frequency if TRUE.
Default set to TRUE.
Value
Named numeric vector of codon frequencies
Examples
sequence <- "ATGATGATGTTATTATTACGCCGCCGCC"
frequencies <- calculate_codon_frequencies(sequence)
