Compare Entropy Profiles — compare_entropy

Compare entropy profiles between multiple sequences or regions.

Usage

compare_entropy_profiles(..., metric = "shannon_entropy", labels = NULL)

Arguments

...: One or more scan results or named lists with scan results
metric: Character string: "shannon_entropy" or "kl_divergence"
labels: Optional character vector of labels for each profile

Value

A ggplot2 object

Examples

seq1 <- paste(rep("ATGATGATG", 30), collapse = "")
seq2 <- paste(rep("ACGTACGT", 30), collapse = "")
result1 <- sliding_window_scan(seq1, window_size = 100, step_size = 20)
result2 <- sliding_window_scan(seq2, window_size = 100, step_size = 20)
plot <- compare_entropy_profiles(result1, result2, labels = c("Region 1", "Region 2"))
#> Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
#> ℹ Please use `linewidth` instead.
#> ℹ The deprecated feature was likely used in the GeneScout package.
#>   Please report the issue at <https://github.com/danymukesha/GeneScout/issues>.