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Run Genomic Case Study: DNA Sequence Diversity

Source: R/biological_example.R
run_genomic_case_study.Rd

Case study analyzing genetic diversity using decoupling of Hamming distances

Usage

run_genomic_case_study(
  num_sequences = 10,
  sequence_length = 50,
  B = 500,
  seed = 123
)

Arguments

num_sequences

Number of DNA sequences to generate

sequence_length

Length of each DNA sequence

B

Number of decoupling iterations

seed

Random seed for reproducibility

Value

DecoupleResult object with analysis results

Examples

# Run case study with default parameters
result <- run_genomic_case_study()
#> 
#> === Biological Interpretation ===
#> Original mean Hamming distance: 37.4889
#> Expected distance under independence: 33.6505
#> Observed distance is 3.46 standard deviations from independence expectation
#> Significant evidence of dependence between sequences (p < 0.05)
#> This suggests shared evolutionary history or functional constraints

# Plot results
plot(result)