Data Processing Phase 1 Report
This report outlines the data processing steps involved in phase 1. It covers various preprocessing tasks such as reformatting material names, adding missing phenotype data, selecting metadata, deduplication, imputation of missing values, and performing principal component analysis (PCA).
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Data Processing Phase 2 Report
This report focuses on the data processing steps involved in phase 2. It encompasses filtering the data, transforming it using Compositional Log-Ratio (CLR) transformation, assessing batch effects, and applying batch correction methods such as removeBatchEffect, ComBat, PLSDA-batch, sPLSDA-batch, and percentile normalization.
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