Visualize Batch Correction Effects — visualize_batch

This function visualizes the effects of batch correction methods by generating boxplot or barplot.

Usage

visualize_batch_correction(
  corrected_list,
  categories,
  visualization_type = "boxplot"
)

Arguments

corrected_list: A list containing corrected data matrices.
categories: Classification of samples
visualization_type: A character string specifying the type of visualization. It can be either "boxplot" or "barplot".

Value

A ggplot object representing the visualization.

Examples

#load correct.list from dataPreparation
corrected_list <- dataPreparation::corrected_list
n <- nrow(corrected_list$`Before correction`)
categories <- dataPreparation::imputed_data$categories[1:n,]

# Visualize batch correction effects using boxplot
visualize_batch_correction(corrected_list, categories,
        visualization_type = "boxplot")
#> Warning: replacing previous import ‘S4Arrays::makeNindexFromArrayViewport’ by ‘DelayedArray::makeNindexFromArrayViewport’ when loading ‘SummarizedExperiment’


# Visualize batch correction effects using barplot
visualize_batch_correction(corrected_list, categories,
        visualization_type = "barplot")