Pleiotropy Significance Landscape — plot_pleiotropy

Creates a cumulative distribution plot showing the significance landscape of pleiotropic associations. Helps understand the distribution of significance across all pleiotropic SNPs.

Usage

plot_pleiotropy_landscape(
  pleio_data,
  n_bins = 30,
  show_median = TRUE,
  show_mean = FALSE,
  show_quantiles = TRUE,
  color_palette = "viridis"
)

Arguments

pleio_data: A data.frame containing pleiotropy analysis results
n_bins: Integer. Number of bins for histogram (default: 30)
show_median: Logical. Show median line (default: TRUE)
show_mean: Logical. Show mean line (default: FALSE)
show_quantiles: Logical. Show 25th and 75th percentiles (default: TRUE)
color_palette: Character. Color palette (default: "viridis")

Value

A ggplot2 object

Examples

data(gwas_subset)
pleio_results <- detect_pleiotropy(gwas_subset)
if (nrow(pleio_results) > 0) {
    p <- plot_pleiotropy_landscape(pleio_results)
    print(p)
}