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mwbenchr: R Interface for Direct Access to Metabolomics Workbench REST API

Source: R/mwbenchr.R
mwbenchr.Rd

The mwbenchr package enables programmatic retrieval and processing of metabolomics data through the Metabolomics Workbench REST API (v1.2). It provides access to study metadata, compound information, RefMet standardized metabolite names, metabolomics statistics (MetStat), gene and protein data, and pathway mappings (moverz), facilitating reproducible workflows and data integration for metabolomics research.

Main Functions

mw_rest_client

Initialize REST client

get_study_summary

Get study information

get_compound_by_regno

Get compound data

search_metstat

Search studies by criteria

get_refmet_by_name

Get RefMet standardized names

See also

https://www.metabolomicsworkbench.org/tools/mw_rest.php

Author

Maintainer: Dany Mukesha danymukesha@gmail.com (ORCID)