Package index • mwbenchr

Client Setup

mw_rest_client(): Initialize Metabolomics Workbench REST client

Study Data

get_study_summary(): Get study summary information

get_study_factors(): Get study experimental factors

get_study_metabolites(): Get study metabolite list

get_study_data(): Get study data matrix

Compound Information

get_compound_by_regno(): Get compound information by registry number

get_compound_by_pubchem_cid(): Get compound information by PubChem CID

get_compound_classification(): Get compound classification hierarchy

RefMet Integration

get_refmet_by_name(): Get RefMet information by name

standardize_to_refmet(): Standardize metabolite name to RefMet

get_all_refmet_names(): Get all RefMet names

Mass Spectrometry

search_by_mass(): Search compounds by mass

calculate_exact_mass(): Calculate exact mass for lipid

Search

search_metstat(): Search studies using MetStat criteria

Utilities

response_to_df(): Convert Response to Data Frame

list_endpoints(): List available API endpoints

download_compound_structure(): Download compound structure file

flatten_entry(): Flatten a metabolite entry with nested sample data

mwbenchr-package mwbenchr: mwbenchr: R Interface for Direct Access to Metabolomics Workbench REST API

parse_mw_output(): Parse a tab-delimited string into a data frame

print(<mw_rest_client>): Print method for mw_rest_client objects