Package index

All functions

bioga()

Run the BioGA genetic algorithm

bioga_fitness()

Evaluate BioGA fitness

bioga_main_cpp()

Main genetic algorithm loop for genomic data optimisation

crossover_cpp()

Generate offspring by crossover

evaluate_fitness_cpp()

Evaluate fitness with two competing objectives

initialize_population_cpp()

Initialize a population, optionally guided by gene clusters

mutation_cpp()

Mutate offspring with an adaptive rate

replacement_cpp()

Build the next population with NSGA-II environmental selection

selection_cpp()

Select parents using NSGA-II rank and crowding distance